JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA0960.1 BHLH104 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0961.1 BHLH112 Oryza sativa Japonica Group Basic helix-loop-helix factors (bHLH)
MA0961.2 bHLH112 Oryza sativa Japonica Group Basic helix-loop-helix factors (bHLH) bHLH
MA0962.1 BHLH34 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0962.2 bHLH34 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0963.1 bHLH78 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0964.1 BIM1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0964.2 BIM1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0964.3 BIM1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0965.1 BIM2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Cluster

Cluster selected models using STAMP tool.



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Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.