JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA0970.1 CAMTA3 Arabidopsis thaliana CAMTA
MA0970.2 CAMTA3 Arabidopsis thaliana GCM domain factors CAMTA
MA0971.1 DREB1A Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0971.2 DREB1A Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0972.1 CCA1 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA0973.1 CDF2 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0973.2 CDF2 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0974.1 CDF3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0974.2 CDF3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0974.3 CDF3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
Showing 10 profiles of page 192 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.