JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1364.2 BHLH72 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA1365.1 AT5G47660 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1365.2 AT5G47660 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1365.3 AT5G47660 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1366.1 DF1 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1366.2 DF1 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1367.1 AT1G76870 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1367.2 AT1G76870 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1368.1 GT-4 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1368.2 GT-4 Arabidopsis thaliana Tryptophan cluster factors Trihelix
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.