JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1504.2 HOXC4 Homo sapiens Homeo domain factors HOX
MA1505.1 HOXC8 Homo sapiens Homeo domain factors HOX
MA1505.2 HOXC8 Homo sapiens Homeo domain factors HOX
MA1506.1 HOXD10 Homo sapiens Homeo domain factors HOX
MA1506.2 HOXD10 Homo sapiens Homeo domain factors HOX
MA1507.1 HOXD4 Homo sapiens Homeo domain factors HOX
MA1507.2 HOXD4 Homo sapiens Homeo domain factors HOX
MA1508.1 IKZF1 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1508.2 IKZF1 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1509.1 IRF6 Homo sapiens Tryptophan cluster factors Interferon-regulatory factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.