JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1516.1 KLF3 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1516.2 KLF3 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1517.1 KLF6 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1517.2 KLF6 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1518.1 LHX1 Homo sapiens Homeo domain factors HD-LIM
MA1518.2 Lhx1 Mus musculus Homeo domain factors HD-LIM
MA1518.3 Lhx1 Mus musculus Homeo domain factors HD-LIM
MA1519.1 LHX5 Homo sapiens Homeo domain factors HD-LIM
MA1519.2 LHX5 Homo sapiens Homeo domain factors HD-LIM
MA1520.1 MAF Homo sapiens Basic leucine zipper factors (bZIP) Maf-related
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.