JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1630.1 Znf281 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1630.2 ZNF281 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1630.3 ZNF281 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1631.1 ASCL1 Homo sapiens Basic helix-loop-helix factors (bHLH) MyoD/ASC-related factors
MA1631.2 ASCL1 Homo sapiens Basic helix-loop-helix factors (bHLH) MyoD/ASC-related factors
MA1632.1 ATF2 Homo sapiens Basic leucine zipper factors (bZIP) Jun-related
MA1632.2 ATF2 Homo sapiens Basic leucine zipper factors (bZIP) Jun-related
MA1633.1 BACH1 Homo sapiens Basic leucine zipper factors (bZIP) Jun-related
MA1633.2 BACH1 Homo sapiens Basic leucine zipper factors (bZIP) Jun-related
MA1634.1 BATF Homo sapiens Basic leucine zipper factors (bZIP) B-ATF-related factors
Showing 10 profiles of page 309 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.