JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1965.1 SP5 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1965.2 SP5 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1966.1 TFAP4::ETV1 Homo sapiens Basic helix-loop-helix factors (bHLH)::Tryptophan cluster factors bHLH-ZIP::Ets-related
MA1966.2 TFAP4::ETV1 Homo sapiens Basic helix-loop-helix factors (bHLH)::Tryptophan cluster factors bHLH-ZIP::Ets-related
MA1967.1 TFAP4::FLI1 Homo sapiens Basic helix-loop-helix factors (bHLH)::Tryptophan cluster factors bHLH-ZIP::Ets-related
MA1967.2 TFAP4::FLI1 Homo sapiens Basic helix-loop-helix factors (bHLH)::Tryptophan cluster factors bHLH-ZIP::Ets-related
MA1968.1 TFCP2 Homo sapiens Grainyhead domain factors CP2-related factors
MA1968.2 TFCP2 Homo sapiens Grainyhead domain factors CP2-related factors
MA1969.1 THRA Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1969.2 THRA Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
Showing 10 profiles of page 371 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.