JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2065.1 PK08602.1 Cannabis sativa AP2/EREBP
MA2066.1 PK09021.1 Cannabis sativa Basic leucine zipper factors (bZIP) Group D
MA2067.1 PK09702.1 Cannabis sativa Basic helix-loop-helix factors (bHLH) bHLH
MA2068.1 PK10344.1 Cannabis sativa TCP
MA2069.1 PK10955.1 Cannabis sativa Other C4 zinc finger-type factors DOF
MA2070.1 PK15337.1 Cannabis sativa Other C4 zinc finger-type factors DOF
MA2071.1 PK15505.1 Cannabis sativa Basic helix-loop-helix factors (bHLH) bHLH
MA2072.1 PK16335.1 Cannabis sativa Basic leucine zipper factors (bZIP) Group D
MA2073.1 PK16340.1 Cannabis sativa Other C4 zinc finger-type factors DOF
MA2074.1 PK17878.1 Cannabis sativa AP2/EREBP ERF/DREB
Showing 10 profiles of page 389 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.