JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2115.1 Pax6 Ciona intestinalis Paired box factors Paired plus homeo domain
MA2116.1 Pou4 Ciona intestinalis Homeo domain factors POU domain factors
MA2117.1 FOXP4 Homo sapiens Fork head/winged helix factors FOX
MA2118.1 FOXS1 Homo sapiens Fork head/winged helix factors FOX
MA2119.1 HOXA3 Homo sapiens Homeo domain factors HOX
MA2120.1 ZNF184 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2121.1 ZNF213 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2122.1 Ebf4 Mus musculus Rel homology region (RHR) factors EBF-related
MA2123.1 Hand1 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA2124.1 Hmga1 Mus musculus TATA-binding proteins HMGA
Showing 10 profiles of page 394 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.