JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2135.1 jun-1 Caenorhabditis elegans Basic leucine zipper factors (bZIP) Jun-related
MA2136.1 klf-3 Caenorhabditis elegans C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2137.1 klu-1 Caenorhabditis elegans C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2138.1 klu-2 Caenorhabditis elegans C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2139.1 let-381 Caenorhabditis elegans Fork head/winged helix factors FOX
MA2140.1 lin-31 Caenorhabditis elegans Fork head/winged helix factors FOX
MA2141.1 lin-48 Caenorhabditis elegans C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2142.1 nhr-142 Caenorhabditis elegans Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA2143.1 nhr-25 Caenorhabditis elegans Nuclear receptors with C4 zinc fingers FTZF1-related (NR5A)
MA2144.1 nhr-5 Caenorhabditis elegans Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
Showing 10 profiles of page 396 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.