JASPAR CORE

  1. Home
  2. Collection CORE

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2127.1 atf-2 Caenorhabditis elegans Basic leucine zipper factors (bZIP) CEBP-related
MA2128.1 ceh-18 Caenorhabditis elegans Homeo domain factors POU domain factors
MA2129.1 ceh-23 Caenorhabditis elegans Homeo domain factors NK
MA2130.1 dmd-10 Caenorhabditis elegans DM-type intertwined zinc finger factors DMRT factors
MA2131.1 egl-38 Caenorhabditis elegans Paired box factors Paired domain only
MA2132.1 egrh-1 Caenorhabditis elegans C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2133.1 elt-7 Caenorhabditis elegans Other C4 zinc finger-type factors C4-GATA-related
MA2134.1 end-3 Caenorhabditis elegans Other C4 zinc finger-type factors C4-GATA-related
MA2135.1 jun-1 Caenorhabditis elegans Basic leucine zipper factors (bZIP) Jun-related
MA2136.1 klf-3 Caenorhabditis elegans C2H2 zinc finger factors Three-zinc finger Kruppel-related
Showing 10 profiles of page 396 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.