JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2145.1 nhr-70 Caenorhabditis elegans Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA2146.1 nhr-86 Caenorhabditis elegans Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA2147.1 nsy-7 Caenorhabditis elegans Homeo domain factors Paired-related HD factors
MA2148.1 odd-2 Caenorhabditis elegans C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2149.1 odr-7 Caenorhabditis elegans Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA2150.1 pag-3 Caenorhabditis elegans C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2151.1 pax-2 Caenorhabditis elegans Paired box factors Paired domain only
MA2152.1 ref-1 Caenorhabditis elegans Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2153.1 sex-1 Caenorhabditis elegans Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA2154.1 snai-1 Caenorhabditis elegans C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 397 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.