JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA0011.2 br Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0012.1 br Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0012.2 br Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0013.1 br Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0014.1 Pax5 Mus musculus Paired box factors Paired domain only
MA0014.2 PAX5 Homo sapiens Paired box factors Paired domain only
MA0014.3 PAX5 Homo sapiens Paired box factors Paired domain only
MA0014.4 PAX5 Homo sapiens Paired box factors Paired domain only
MA0015.1 Cf2 Drosophila melanogaster C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0015.2 Cf2 Drosophila melanogaster C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



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Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

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Download the PFMs of the model(s) selected in four different formats.