JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2225.1 erm Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2226.1 ERR Drosophila melanogaster Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA2227.1 esg Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2228.1 Ets65A Drosophila melanogaster Tryptophan cluster factors Ets-related
MA2229.1 Ets96B Drosophila melanogaster Tryptophan cluster factors Ets-related
MA2230.1 Ets97D Drosophila melanogaster Tryptophan cluster factors Ets-related
MA2231.1 Ets98B Drosophila melanogaster Tryptophan cluster factors Ets-related
MA2232.1 fd59A Drosophila melanogaster Fork head/winged helix factors FOX
MA2233.1 Fer1 Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Tal-related
MA2234.1 Fer2 Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Tal-related
Showing 10 profiles of page 405 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.