JASPAR CORE

  1. Home
  2. Collection CORE

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2265.1 retn Drosophila melanogaster ARID ARID-related
MA2266.1 Rfx Drosophila melanogaster Fork head/winged helix factors RFX-related factors
MA2267.1 rib Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA2268.1 sage Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA2269.1 sc Drosophila melanogaster Basic helix-loop-helix factors (bHLH) MyoD/ASC-related factors
MA2270.1 scrt Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2271.1 sens Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2272.1 slp2 Drosophila melanogaster Fork head/winged helix factors FOX
MA2273.1 Sox102F Drosophila melanogaster High-mobility group (HMG) domain factors SOX-related factors
MA2274.1 Sox14 Drosophila melanogaster High-mobility group (HMG) domain factors SOX-related factors
Showing 10 profiles of page 409 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.