JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2285.1 sug Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2286.1 svp Drosophila melanogaster Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA2287.1 TfAP-2 Drosophila melanogaster Basic helix-span-helix factors (bHSH) AP-2
MA2288.1 tj Drosophila melanogaster Basic leucine zipper factors (bZIP) Maf-related
MA2289.1 toy Drosophila melanogaster Paired box factors Paired plus homeo domain
MA2290.1 Usf Drosophila melanogaster Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA2291.1 vri Drosophila melanogaster Basic leucine zipper factors (bZIP) CEBP-related
MA2292.1 wor Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2293.1 Xbp1 Drosophila melanogaster Basic leucine zipper factors (bZIP) XBP-1-related factors
MA2294.1 Xrp1 Drosophila melanogaster
Showing 10 profiles of page 411 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.