JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA2305.1 cyc Drosophila melanogaster Basic helix-loop-helix factors (bHLH) PAS domain factors
MA2306.1 D1 Drosophila melanogaster TATA-binding proteins HMGA
MA2307.1 D19B Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2308.1 da Drosophila melanogaster Basic helix-loop-helix factors (bHLH) E2A
MA2309.1 ewg Drosophila melanogaster Basic leucine zipper factors (bZIP) Jun-related
MA2310.1 fru Drosophila melanogaster C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2311.1 ftz-f1 Drosophila melanogaster Nuclear receptors with C4 zinc fingers FTZF1-related (NR5A)
MA2312.1 grn Drosophila melanogaster Other C4 zinc finger-type factors C4-GATA-related
MA2313.1 hng1 Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2314.1 hr3 Drosophila melanogaster Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.