JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2366.1 VOZ2 Arabidopsis thaliana GCM domain factors VOZ
MA2367.1 WIP5 Arabidopsis thaliana C2H2 zinc finger factors C2H2
MA2368.1 WRKY51 Arabidopsis thaliana GCM domain factors WRKY
MA2370.1 MBD2 Arabidopsis thaliana C2H2 zinc finger factors
MA2371.1 MYB31 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2372.1 AZF1 Arabidopsis thaliana C2H2 zinc finger factors
MA2373.1 AZF2 Arabidopsis thaliana C2H2 zinc finger factors
MA2374.1 AHL13 Arabidopsis thaliana A.T hook factors AHL
MA2375.1 BMY2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) BES/BZR
MA2376.1 CAMTA5 Arabidopsis thaliana GCM domain factors CAMTA
Showing 10 profiles of page 419 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.