JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2408.1 BAD1 Zea mays TCP
MA2409.1 ZmbZIP25 Zea mays Basic leucine zipper factors (bZIP) D
MA2410.1 ZmbZIP54 Zea mays Basic leucine zipper factors (bZIP) S
MA2411.1 ZmbZIP57 Zea mays Basic leucine zipper factors (bZIP) S
MA2412.1 ZmbZIP72 Zea mays Basic leucine zipper factors (bZIP) S
MA2413.1 ZmbZIP96 Zea mays Basic leucine zipper factors (bZIP) D
MA2414.1 EREB127 Zea mays AP2/EREBP ERF/DREB
MA2415.1 EREB138 Zea mays AP2/EREBP ERF/DREB
MA2416.1 EREB29 Zea mays AP2/EREBP ERF/DREB
MA2417.1 EREB71 Zea mays AP2/EREBP ERF/DREB
Showing 10 profiles of page 423 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.