JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA2439.1 SPL2A Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2440.1 SPL2B Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2441.1 SPL3A Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2442.1 SPL3B Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2443.1 SPL3D Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2444.1 SPL4A Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2445.1 SPL4D Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2446.1 SPL5A Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2448.1 SPL5D Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2449.1 SPL6A Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
Showing 10 profiles of page 426 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.