JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2471.1 SPCH Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA2472.1 AT3G12910 Arabidopsis thaliana GCM domain factors NAC
MA2473.1 HB88 Zea mays Homeo domain factors WOX
MA2474.1 HMGB10 Arabidopsis thaliana Homeo domain factors ARID
MA2475.1 HOX6 Oryza sativa Homeo domain factors HD-ZIP
MA2476.1 KNAT7 Arabidopsis thaliana Homeo domain factors TALE-type HD
MA2477.1 NGA4 Arabidopsis thaliana B3 RAV
MA2478.1 PK13314.1 Cannabis sativa TCP
MA2479.1 TCX5 Arabidopsis thaliana CPP
MA2480.1 GLYMA-04G093300 Glycine max Homeo domain factors PLINC
Showing 10 profiles of page 429 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.