JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2481.1 PK12011.1 Cannabis sativa Tryptophan cluster factors MYB
MA2482.1 PK27693.1 Cannabis sativa
MA2483.1 PK20543.1 Cannabis sativa Tryptophan cluster factors Trihelix
MA2484.1 Dmrtb1 Mus musculus DM-type intertwined zinc finger factors DMRT factors
MA2485.1 Duxbl1 Mus musculus Helix-Turn-Helix Homeo
MA2486.1 Fosb Mus musculus Basic leucine zipper factors (bZIP) Fos-related
MA2487.1 ZBTB21 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2488.1 ZBTB40 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2489.1 ZFP28 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2490.1 ZFP3 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 430 from 458 pages

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Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.