JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2511.1 ZNF335 Homo sapiens C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA2512.1 ZNF648 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2513.1 FLYWCH1 Homo sapiens FLYWCH1
MA2514.1 ZNF853 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2515.1 ZNF865 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2516.1 ZSCAN2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2517.1 ZSCAN25 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2518.1 ZNF551 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2519.1 ZNF606 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2520.1 ZNF678 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 433 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.