JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2531.1 ZNF775 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2532.1 ZNF780B Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2533.1 ZNF814 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2534.1 ZNF831 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2535.1 MYPOP Homo sapiens Tryptophan cluster factors Myb-SANT
MA2536.1 PRDM13 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2537.1 SALL3 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2538.1 CGGBP1 Homo sapiens C2H2 zinc finger factors
MA2539.1 SLC2A4RG Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2540.1 SP140L Homo sapiens SAND domain factors Sp140-Sp100
Showing 10 profiles of page 435 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.