JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2541.1 CREB3L3 Homo sapiens Basic leucine zipper factors (bZIP) CREB-related
MA2542.1 SCAND3 Homo sapiens C2H2 zinc finger factors BED zinc finger factors
MA2543.1 ZBTB47 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2544.1 ZKSCAN4 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2545.1 ZNF57 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2546.1 ZNF131 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2547.1 ZNF215 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2548.1 ZNF226 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2549.1 ZNF234 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2550.1 ZNF275 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 436 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.