JASPAR CORE

  1. Home
  2. Collection CORE

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2581.1 ZNF66 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2582.1 ZNF121 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2583.1 ZNF142 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2584.1 DNTTIP1 Homo sapiens Rel homology region (RHR) factors NFkappaB-related
MA2585.1 ZNF500 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2586.1 ZNF518B Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2587.1 ZNF672 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2588.1 FAM200B Homo sapiens C2H2 zinc finger factors BED zinc finger factors
MA2589.1 ZNF728 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2590.1 ZNF841 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 440 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.