JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2601.1 USF3 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA2602.1 ZBED5 Homo sapiens C2H2 zinc finger factors BED zinc finger factors
MA2603.1 ZFTA Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2604.1 dof22 Zea mays Other C4 zinc finger-type factors DOF
MA2605.1 mybr26 Zea mays Tryptophan cluster factors MYB-related
MA2606.1 mybr43 Zea mays Tryptophan cluster factors MYB-related
MA2607.1 tcptf23 Zea mays TCP
MA2608.1 glk53 Zea mays Tryptophan cluster factors GARP_G2-like
MA2609.1 ereb172 Zea mays AP2/EREBP ERF/DREB
MA2610.1 ereb97 Zea mays AP2/EREBP ERF/DREB
Showing 10 profiles of page 442 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.