JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA2631.1 bab1 Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA2632.1 crol Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2633.1 Sry-delta Drosophila melanogaster C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2634.1 EIN3 Arabidopsis thaliana EIL EIL
MA2635.1 FUL Arabidopsis thaliana MADS box factors Type II
MA2636.1 FUL::AG Arabidopsis thaliana MADS box factors Type II
MA2637.1 FUL::AG::SEP3 Arabidopsis thaliana MADS box factors Type II
MA2638.1 FUL::SEP3 Arabidopsis thaliana MADS box factors Type II
MA2639.1 FUL::SOC1 Arabidopsis thaliana MADS box factors Type II
MA2640.1 GLYMA-19G062000 Glycine max Tryptophan cluster factors MYB
Showing 10 profiles of page 445 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.