JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2641.1 GLYMA-01G038600 Glycine max Tryptophan cluster factors MYB-related
MA2642.1 GLYMA-10G230700 Glycine max Tryptophan cluster factors MYB-related
MA2643.1 SNAC23 Glycine max GCM domain factors NAC
MA2644.1 GLYMA-14G030700 Glycine max GCM domain factors NAC
MA2645.1 GLYMA-16G042900 Glycine max GCM domain factors NAC
MA2646.1 GLYMA-11G083900 Glycine max C3H(C),C2HC zinc-fingers like factors SBP
MA2647.1 GLYMA-12G226000 Glycine max C3H(C),C2HC zinc-fingers like factors SBP
MA2648.1 GLYMA-19G146000 Glycine max C3H(C),C2HC zinc-fingers like factors SBP
MA2649.1 GLYMA-08G271900 Glycine max Basic helix-loop-helix domain factors (bHLH) bHLH
MA2650.1 GLYMA-05G027400 Glycine max TCP
Showing 10 profiles of page 446 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.