JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2711.1 SolycHsfB2b Solanum lycopersicum Heat shock factors HSF
MA2712.1 eil1 Solanum lycopersicum EIL
MA2713.1 SlDof14 Solanum lycopersicum Other C4 zinc finger-type factors DOF
MA2714.1 APETALA2a Solanum lycopersicum AP2/EREBP AP2
MA2715.1 Solyc03g124110 Solanum lycopersicum AP2/EREBP ERF/DREB
MA2716.1 dreb3 Solanum lycopersicum AP2/EREBP ERF/DREB
MA2717.1 eil2 Solanum lycopersicum EIL
MA2718.1 Sl-ERF_A_3 Solanum lycopersicum AP2/EREBP ERF/DREB
MA2719.1 lat61 Solanum lycopersicum Basic helix-loop-helix factors (bHLH) BES/BZR
MA2720.1 nacnor Solanum lycopersicum GCM domain factors NAC
Showing 10 profiles of page 453 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.