JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2721.1 Sl-ERF_C_6 Solanum lycopersicum AP2/EREBP ERF/DREB
MA2722.1 Sl-ERF_F_2 Solanum lycopersicum AP2/EREBP ERF/DREB
MA2723.1 Solyc06g060230 Solanum lycopersicum GCM domain factors NAC
MA2724.1 SlTCP18 Solanum lycopersicum TCP
MA2725.1 SlWRKY6 Solanum lycopersicum GCM domain factors WRKY
MA2726.1 SlWRKY41 Solanum lycopersicum GCM domain factors WRKY
MA2727.1 SolycHsfA7 Solanum lycopersicum Heat shock factors HSF
MA2728.1 SolycHsfC1 Solanum lycopersicum Heat shock factors HSF
MA2729.1 vahox1 Solanum lycopersicum Homeo domain factors HD-ZIP
MA2730.1 Solyc01g079480 Solanum lycopersicum Basic leucine zipper factors (bZIP) Group S
Showing 10 profiles of page 454 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.