JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2731.1 sep3 Solanum lycopersicum MADS box factors MIKC
MA2732.1 Sl-ERF_C_4 Solanum lycopersicum AP2/EREBP ERF/DREB
MA2733.1 Sl-ERF_F_4 Solanum lycopersicum AP2/EREBP ERF/DREB
MA2734.1 Sl-ERF_F_5 Solanum lycopersicum AP2/EREBP ERF/DREB
MA2735.1 SlbHLH014 Solanum lycopersicum Basic helix-loop-helix factors (bHLH) bHLH
MA2736.1 la3 Solanum lycopersicum Basic helix-loop-helix factors (bHLH) bHLH
MA2737.1 SlERF36 Solanum lycopersicum AP2/EREBP ERF/DREB
MA2738.1 Cnr Solanum lycopersicum C3H(C),C2HC zinc-fingers like factors SBP
MA2739.1 SlTCP12 Solanum lycopersicum TCP
MA2740.1 SlTCP15 Solanum lycopersicum TCP
Showing 10 profiles of page 455 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.