JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2751.1 TraesCS2B02G304400 Triticum aestivum Tryptophan cluster factors Trihelix
MA2752.1 TaOBF1b Triticum aestivum Basic leucine zipper factors (bZIP) Group S
MA2753.1 cpp8 Zea mays CPP
MA2754.1 wrky38 Zea mays GCM domain factors WRKY
MA2755.1 hsftf24 Zea mays Heat shock factors HSF
MA2756.1 dfo23 Zea mays Other C4 zinc finger-type factors DOF
MA2757.1 pbf1 Zea mays Other C4 zinc finger-type factors DOF
MA2758.1 ereb122 Zea mays AP2/EREBP ERF/DREB
MA2759.1 ereb7 Zea mays AP2/EREBP ERF/DREB
MA2760.1 p2 Zea mays Tryptophan cluster factors MYB
Showing 10 profiles of page 457 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.