JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0216.1 cad Drosophila melanogaster Homeo domain factors HOX
MA0216.2 cad Drosophila melanogaster Homeo domain factors HOX
MA0217.1 caup Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0218.1 ct Drosophila melanogaster Homeo domain factors HD-CUT
MA0219.1 ems Drosophila melanogaster Homeo domain factors NK
MA0220.1 en Drosophila melanogaster Homeo domain factors NK
MA0221.1 eve Drosophila melanogaster Homeo domain factors HOX
MA0222.1 exd Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0222.2 exd Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0224.1 exex Drosophila melanogaster Homeo domain factors HOX
Showing 10 profiles of page 49 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.