JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA0243.1 sd Drosophila melanogaster TEA domain factors
MA0243.2 sd Drosophila melanogaster TEA domain factors TEF-1-related factors
MA0244.1 slbo Drosophila melanogaster Basic leucine zipper factors (bZIP) CEBP-related
MA0245.1 slou Drosophila melanogaster Homeo domain factors NK
MA0246.1 so Drosophila melanogaster Homeo domain factors HD-SINE
MA0247.1 tin Drosophila melanogaster Homeo domain factors Homeo
MA0247.2 tin Drosophila melanogaster Homeo domain factors Homeo
MA0247.3 tin Drosophila melanogaster Homeo domain factors Homeo
MA0248.1 tup Drosophila melanogaster Homeo domain factors HD-LIM
MA0249.1 twi Drosophila melanogaster Basic helix-loop-helix factors (bHLH)
Showing 10 profiles of page 52 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.