JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0403.2 TBF1 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0403.3 TBF1 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0404.1 TBS1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0405.1 TEA1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0406.1 TEC1 Saccharomyces cerevisiae TEA domain factors
MA0406.2 TEC1 Saccharomyces cerevisiae TEA domain factors
MA0407.1 THI2 Saccharomyces cerevisiae C6 zinc cluster factors
MA0408.1 TOS8 Saccharomyces cerevisiae Homeo domain factors TALE-type homeo domain factors
MA0408.2 TOS8 Saccharomyces cerevisiae Homeo domain factors TALE-type homeo domain factors
MA0409.1 TYE7 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH)
Showing 10 profiles of page 78 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.