JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0592.1 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.2 Esrra Mus musculus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.3 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.4 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0593.1 FOXP2 Homo sapiens Fork head/winged helix factors FOX
MA0593.2 FOXP2 Homo sapiens Fork head/winged helix factors FOX
MA0594.1 Hoxa9 Mus musculus Homeo domain factors HOX
MA0594.2 HOXA9 Homo sapiens Homeo domain factors HOX
MA0594.3 HOXA9 Homo sapiens Homeo domain factors HOX
MA0595.1 SREBF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
Showing 10 profiles of page 116 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.