JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1808.2 GLYMA-06G314400 Glycine max Basic leucine zipper factors (bZIP) group A
MA1808.3 GLYMA-06G314400 Glycine max Basic leucine zipper factors (bZIP) group A
MA1809.1 GLYMA-07G038400 Glycine max C3H zinc finger factors GRF
MA1809.2 GLYMA-07G038400 Glycine max C3H zinc finger factors GRF
MA1810.1 GLYMA-08G357600 Glycine max B3 LAV
MA1810.2 GLYMA-08G357600 Glycine max B3 LAV
MA1811.1 GLYMA-13G317000 Glycine max Basic leucine zipper factors (bZIP) bZIP
MA1811.2 GLYMA-13G317000 Glycine max Basic leucine zipper factors (bZIP) bZIP
MA1811.3 GLYMA-13G317000 Glycine max Basic leucine zipper factors (bZIP) bZIP
MA1812.1 ASR1 Solanum lycopersicum Tryptophan cluster factors MYB-related
MA1812.2 ASR1 Solanum lycopersicum Tryptophan cluster factors MYB-related
MA1813.1 EIL4 Solanum lycopersicum EIL
MA1813.2 EIL4 Solanum lycopersicum EIL
MA1814.1 RIN Solanum lycopersicum MADS box factors Type II
MA1814.2 RIN Solanum lycopersicum MADS box factors Type II
MA1816.1 O11 Zea mays Basic helix-loop-helix factors (bHLH) bHLH
MA1816.2 O11 Zea mays Basic helix-loop-helix factors (bHLH) bHLH
MA1817.1 Zm00001d020267 Zea mays AP2/EREBP ERF/DREB
MA1817.2 Zm00001d020267 Zea mays AP2/EREBP ERF/DREB
MA1818.1 Zm00001d052229 Zea mays AP2/EREBP ERF/DREB
MA1819.1 Zm00001d005892 Zea mays AP2/EREBP ERF/DREB
MA1819.2 Zm00001d005892 Zea mays AP2/EREBP ERF/DREB
MA1820.1 Zm00001d024324 Zea mays AP2/EREBP ERF/DREB
MA1820.2 Zm00001d024324 Zea mays AP2/EREBP ERF/DREB
MA1821.1 Zm00001d020595 Zea mays AP2/EREBP ERF/DREB
Showing 25 profiles of page 137 from 183 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.