JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1821.2 Zm00001d020595 Zea mays AP2/EREBP ERF/DREB
MA1822.1 Zm00001d018571 Zea mays Basic leucine zipper factors (bZIP)
MA1822.2 Zm00001d018571 Zea mays Basic leucine zipper factors (bZIP)
MA1823.1 Zm00001d027846 Zea mays Other C4 zinc finger-type factors DOF
MA1823.2 Zm00001d027846 Zea mays Other C4 zinc finger-type factors DOF
MA1824.1 Zm00001d005692 Zea mays Homeo domain factors HD-ZIP
MA1824.2 Zm00001d005692 Zea mays Homeo domain factors HD-ZIP
MA1825.1 Zm00001d044409 Zea mays Tryptophan cluster factors MYB-related
MA1825.2 Zm00001d044409 Zea mays Tryptophan cluster factors MYB-related
MA1828.1 Zm00001d038683 Zea mays TCP
MA1828.2 Zm00001d038683 Zea mays TCP
MA1829.1 Zm00001d035604 Zea mays Tryptophan cluster factors MYB
MA1829.2 Zm00001d035604 Zea mays Tryptophan cluster factors MYB
MA1830.1 Zm00001d015407 Zea mays Tryptophan cluster factors GARP_G2-like
MA1830.2 Zm00001d015407 Zea mays Tryptophan cluster factors GARP_G2-like
MA1831.1 Zm00001d031796 Zea mays AP2/EREBP ERF/DREB
MA1831.2 Zm00001d031796 Zea mays AP2/EREBP ERF/DREB
MA1832.1 Zm00001d002364 Zea mays AP2/EREBP ERF/DREB
MA1832.2 Zm00001d002364 Zea mays AP2/EREBP ERF/DREB
MA1833.1 Zm00001d049364 Zea mays AP2/EREBP ERF/DREB
MA1833.2 Zm00001d049364 Zea mays AP2/EREBP ERF/DREB
MA1834.1 Zm00001d034298 Zea mays Basic helix-loop-helix factors (bHLH) bHLH
MA1834.2 Zm00001d034298 Zea mays Basic helix-loop-helix factors (bHLH) bHLH
MA1835.1 TFLG2-Zm00001d042777 Zea mays Basic leucine zipper factors (bZIP) Group D
MA1835.2 TFLG2-Zm00001d042777 Zea mays Basic leucine zipper factors (bZIP) Group D
Showing 25 profiles of page 138 from 183 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.