JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1862.1 FoxD-b Ciona intestinalis Fork head/winged helix factors FOX
MA1862.2 FoxD-b Ciona intestinalis Fork head/winged helix factors FOX
MA1863.1 FoxE Ciona intestinalis Fork head/winged helix factors FOX
MA1863.2 FoxE Ciona intestinalis Fork head/winged helix factors FOX
MA1864.1 FoxF Ciona intestinalis Fork head/winged helix factors FOX
MA1864.2 FoxF Ciona intestinalis Fork head/winged helix factors FOX
MA1865.1 FoxG Ciona intestinalis Fork head/winged helix factors FOX
MA1865.2 FoxG Ciona intestinalis Fork head/winged helix factors FOX
MA1866.1 FoxI-a Ciona intestinalis Fork head/winged helix factors FOX
MA1866.2 FoxI-a Ciona intestinalis Fork head/winged helix factors FOX
MA1867.1 FoxI-b Ciona intestinalis Fork head/winged helix factors FOX
MA1867.2 FoxI-b Ciona intestinalis Fork head/winged helix factors FOX
MA1868.1 FoxI-c Ciona intestinalis Fork head/winged helix factors FOX
MA1868.2 FoxI-c Ciona intestinalis Fork head/winged helix factors FOX
MA1869.1 FoxK Ciona intestinalis Fork head/winged helix factors FOX
MA1869.2 FoxK Ciona intestinalis Fork head/winged helix factors FOX
MA1870.1 FoxL2 Ciona intestinalis Fork head/winged helix factors FOX
MA1870.2 FoxL2 Ciona intestinalis Fork head/winged helix factors FOX
MA1871.1 FoxM Ciona intestinalis Fork head/winged helix factors FOX
MA1871.2 FoxM Ciona intestinalis Fork head/winged helix factors FOX
MA1872.1 FoxO Ciona intestinalis Fork head/winged helix factors FOX
MA1872.2 FoxO Ciona intestinalis Fork head/winged helix factors FOX
MA1873.1 FoxQ Ciona intestinalis Fork head/winged helix factors FOX
MA1873.2 FoxQ Ciona intestinalis Fork head/winged helix factors FOX
MA1874.1 GATA-a Ciona intestinalis Other C4 zinc finger-type factors C4-GATA-related
Showing 25 profiles of page 141 from 183 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.