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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA2019.1 HSFA1B Arabidopsis thaliana Heat shock factors HSF
MA2019.2 HSFA1B Arabidopsis thaliana Heat shock factors HSF
MA2020.1 HSFB4 Arabidopsis thaliana Heat shock factors HSF
MA2020.2 HSFB4 Arabidopsis thaliana Heat shock factors HSF
MA2021.1 LBD13 Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2021.2 LBD13 Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2022.1 LOB Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2022.2 LOB Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2023.1 PHL4 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA2023.2 PHL4 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA2024.1 MYB63 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2024.2 MYB63 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2025.1 MYB93 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2025.2 MYB93 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2026.1 MYB108 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2026.2 MYB108 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2027.1 MYB44 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2027.2 MYB44 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2028.1 MYB49 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2028.2 MYB49 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2029.1 MYB88 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2029.2 MYB88 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2030.1 MYB96 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2030.2 MYB96 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2031.1 AT5G04760 Arabidopsis thaliana Tryptophan cluster factors MYB-related
Showing 25 profiles of page 153 from 183 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.