JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2040.1 AT5G05550 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA2040.2 ENAP2 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA2041.1 MYB13 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2041.2 MYB13 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2042.1 MYB58 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2042.2 MYB58 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2043.1 NAC004 Arabidopsis thaliana GCM domain factors NAC
MA2043.2 NAC004 Arabidopsis thaliana GCM domain factors NAC
MA2044.1 NAC007 Arabidopsis thaliana GCM domain factors NAC
MA2044.2 NAC007 Arabidopsis thaliana GCM domain factors NAC
MA2045.1 NAC031 Arabidopsis thaliana GCM domain factors NAC
MA2045.2 NAC031 Arabidopsis thaliana GCM domain factors NAC
MA2046.1 NAC035 Arabidopsis thaliana GCM domain factors NAC
MA2046.2 NAC035 Arabidopsis thaliana GCM domain factors NAC
MA2047.1 NAC037 Arabidopsis thaliana GCM domain factors NAC
MA2047.2 NAC037 Arabidopsis thaliana GCM domain factors NAC
MA2048.1 NAC045 Arabidopsis thaliana GCM domain factors NAC
MA2048.2 NAC045 Arabidopsis thaliana GCM domain factors NAC
MA2049.1 NAC053 Arabidopsis thaliana GCM domain factors NAC
MA2049.2 NAC053 Arabidopsis thaliana GCM domain factors NAC
MA2050.1 NAC101 Arabidopsis thaliana GCM domain factors NAC
MA2050.2 NAC101 Arabidopsis thaliana GCM domain factors NAC
MA2051.1 NAC68 Arabidopsis thaliana GCM domain factors NAC
MA2051.2 NAC68 Arabidopsis thaliana GCM domain factors NAC
MA2052.1 ZAT6 Arabidopsis thaliana C2H2 zinc finger factors C2H2
Showing 25 profiles of page 155 from 172 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.