JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0779.2 PAX1 Homo sapiens Paired box factors Paired domain only
MA0780.1 PAX3 Homo sapiens Paired box factors Paired plus homeo domain
MA0781.1 PAX9 Homo sapiens Paired box factors Paired domain only
MA0781.2 PAX9 Homo sapiens Paired box factors Paired domain only
MA0782.1 PKNOX1 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0782.2 PKNOX1 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0782.3 PKNOX1 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0783.1 PKNOX2 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0784.1 POU1F1 Homo sapiens Homeo domain factors POU domain factors
MA0784.2 POU1F1 Homo sapiens Homeo domain factors POU domain factors
Showing 10 profiles of page 156 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.