JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2202.1 byn Drosophila melanogaster T-Box factors Brachyury-related factors
MA2203.1 CG12605 Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2204.1 CG4360 Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2205.1 CG7928 Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2206.1 CHES-1-like Drosophila melanogaster Fork head/winged helix factors FOX
MA2207.1 ci Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2208.1 crc Drosophila melanogaster Basic leucine zipper factors (bZIP) ATF-4-related factors
MA2209.1 CrebA Drosophila melanogaster Basic leucine zipper factors (bZIP) CREB-related factors
MA2210.1 CrebB Drosophila melanogaster Basic leucine zipper factors (bZIP) CREB-related factors
MA2211.1 croc Drosophila melanogaster Fork head/winged helix factors FOX
MA2212.1 dar1 Drosophila melanogaster C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2213.1 Dif Drosophila melanogaster Rel homology region (RHR) factors NF-kappaB-related factors
MA2214.1 dimm Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Tal-related
MA2215.1 dm Drosophila melanogaster Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA2216.1 Doc2 Drosophila melanogaster T-Box factors TBX6-related factors
MA2217.1 dpn Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2218.1 dsf Drosophila melanogaster Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA2219.1 E(spl)m3-HLH Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2220.1 E(spl)mbeta-HLH Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2221.1 E(spl)mdelta-HLH Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2222.1 E(spl)mgamma-HLH Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2223.1 EcR Drosophila melanogaster Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA2224.1 Eip75B Drosophila melanogaster Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA2225.1 erm Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2226.1 ERR Drosophila melanogaster Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
Showing 25 profiles of page 162 from 172 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.