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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA2360.1 PK28565.1 Cannabis sativa Tryptophan cluster factors MYB
MA2361.1 PRUPE_ppa000682mg Prunus persica C3H(C),C2HC zinc-fingers like factors SBP
MA2362.1 TEIL Nicotiana tabacum EIL
MA2364.1 VIT_15s0048g01150 Vitis vinifera TCP
MA2365.1 VIT_17s0000g10420 Vitis vinifera Tryptophan cluster factors Trihelix
MA2366.1 VOZ2 Arabidopsis thaliana GCM domain factors VOZ
MA2367.1 WIP5 Arabidopsis thaliana C2H2 zinc finger factors C2H2
MA2368.1 WRKY51 Arabidopsis thaliana GCM domain factors WRKY
MA2370.1 MBD2 Arabidopsis thaliana C2H2 zinc finger factors
MA2371.1 MYB31 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2372.1 AZF1 Arabidopsis thaliana C2H2 zinc finger factors
MA2373.1 AZF2 Arabidopsis thaliana C2H2 zinc finger factors
MA2374.1 AHL13 Arabidopsis thaliana A.T hook factors AHL
MA2375.1 BMY2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) BES/BZR
MA2376.1 CAMTA5 Arabidopsis thaliana GCM domain factors CAMTA
MA2377.1 cassava45561.m1 Manihot esculenta TCP
MA2378.1 CRF3 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA2379.1 DOF3.1 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA2380.1 DOF4.7 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA2381.1 e_gw1.170.52.1 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA2382.1 e_gw1.209.40.1 Physcomitrium patens Basic helix-loop-helix factors (bHLH) bHLH
MA2383.1 e_gw1.392.16.1 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA2384.1 estExt_Genewise1.C_2060077 Physcomitrium patens Basic leucine zipper factors (bZIP) bZIP
MA2386.1 estExt_gwp_gw1.C_550163 Physcomitrium patens AP2/EREBP ERF/DREB
MA2387.1 NAC094 Arabidopsis thaliana GCM domain factors NAC
Showing 25 profiles of page 168 from 183 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.