JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0851.1 Foxj3 Mus musculus Fork head/winged helix factors FOX
MA0851.2 Foxj3 Mus musculus Fork head/winged helix factors FOX
MA0852.1 Foxk1 Mus musculus Fork head/winged helix factors FOX
MA0852.2 FOXK1 Homo sapiens Fork head/winged helix factors FOX
MA0852.3 FOXK1 Homo sapiens Fork head/winged helix factors FOX
MA0853.1 Alx4 Mus musculus Homeo domain factors Paired-related HD factors
MA0853.2 Alx4 Mus musculus Homeo domain factors Paired-related HD factors
MA0854.1 Alx1 Mus musculus Homeo domain factors Paired-related HD factors
MA0854.2 Alx1 Mus musculus Homeo domain factors Paired-related HD factors
MA0855.1 RXRB Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
Showing 10 profiles of page 169 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.