JASPAR CORE

  1. Home
  2. Collection core

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2466.1 kay Drosophila melanogaster Basic leucine zipper factors (bZIP) Fos-related
MA2467.1 pdm2 Drosophila melanogaster Homeo domain factors POU domain factors
MA2468.1 Myb Drosophila melanogaster Tryptophan cluster factors Myb/SANT domain factors
MA2469.1 FOXM1 Homo sapiens Fork head/winged helix factors FOX
MA2470.1 ZBTB48 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2471.1 SPCH Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA2472.1 AT3G12910 Arabidopsis thaliana GCM domain factors NAC
MA2473.1 HB88 Zea mays Homeo domain factors WOX
MA2474.1 HMGB10 Arabidopsis thaliana Homeo domain factors ARID
MA2475.1 HOX6 Oryza sativa Homeo domain factors HD-ZIP
MA2476.1 KNAT7 Arabidopsis thaliana Homeo domain factors TALE-type HD
MA2477.1 NGA4 Arabidopsis thaliana B3 RAV
MA2478.1 PK13314.1 Cannabis sativa TCP
MA2479.1 TCX5 Arabidopsis thaliana CPP
MA2480.1 GLYMA-04G093300 Glycine max Homeo domain factors PLINC
MA2481.1 PK12011.1 Cannabis sativa Tryptophan cluster factors MYB
MA2482.1 PK27693.1 Cannabis sativa
MA2483.1 PK20543.1 Cannabis sativa Tryptophan cluster factors Trihelix
MA2484.1 Dmrtb1 Mus musculus DM-type intertwined zinc finger factors DMRT factors
MA2485.1 Duxbl1 Mus musculus Helix-Turn-Helix Homeo
MA2486.1 Fosb Mus musculus Basic leucine zipper factors (bZIP) Fos-related
MA2487.1 ZBTB21 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2488.1 ZBTB40 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2489.1 ZFP28 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2490.1 ZFP3 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 25 profiles of page 172 from 183 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.