JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0872.1 TFAP2A Homo sapiens Basic helix-span-helix factors (bHSH) AP-2
MA0873.1 HOXD12 Homo sapiens Homeo domain factors HOX
MA0873.2 HOXD12 Homo sapiens Homeo domain factors HOX
MA0874.1 Arx Mus musculus Homeo domain factors Paired-related HD factors
MA0874.2 Arx Mus musculus Homeo domain factors Paired-related HD factors
MA0875.1 BARX1 Homo sapiens Homeo domain factors NK
MA0875.2 BARX1 Homo sapiens Homeo domain factors NK
MA0876.1 BSX Homo sapiens Homeo domain factors NK
MA0876.2 BSX Homo sapiens Homeo domain factors NK
MA0877.1 Barhl1 Mus musculus Homeo domain factors NK
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.