JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA2616.1 ereb17 Zea mays AP2/EREBP ERF/DREB
MA2617.1 ereb54 Zea mays AP2/EREBP ERF/DREB
MA2618.1 ereb102 Zea mays AP2/EREBP ERF/DREB
MA2619.1 ereb18 Zea mays AP2/EREBP ERF/DREB
MA2620.1 g2 Zea mays Tryptophan cluster factors GARP_G2-like
MA2621.1 glk25 Zea mays Tryptophan cluster factors GARP_G2-like
MA2622.1 hb34 Zea mays Homeo domain factors HD-ZIP
MA2623.1 hb66 Zea mays Homeo domain factors HD-ZIP
MA2624.1 myb37 Zea mays Tryptophan cluster factors MYB
MA2625.1 mybr17 Zea mays Tryptophan cluster factors MYB-related
MA2626.1 bzip40 Zea mays Basic leucine zipper factors (bZIP) Group S
MA2627.1 bzip9 Zea mays Basic leucine zipper factors (bZIP) Group S
MA2628.1 HELT Homo sapiens Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2629.1 GSC::TBX21 Homo sapiens Homeo domain factors::T-Box factors Paired-related HD factors::TBX1-related factors
MA2630.1 Sry-beta Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2631.1 bab1 Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA2632.1 crol Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2633.1 Sry-delta Drosophila melanogaster C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2634.1 EIN3 Arabidopsis thaliana EIL EIL
MA2635.1 FUL Arabidopsis thaliana MADS box factors Type II
MA2636.1 FUL::AG Arabidopsis thaliana MADS box factors Type II
MA2637.1 FUL::AG::SEP3 Arabidopsis thaliana MADS box factors Type II
MA2638.1 FUL::SEP3 Arabidopsis thaliana MADS box factors Type II
MA2639.1 FUL::SOC1 Arabidopsis thaliana MADS box factors Type II
MA2640.1 GLYMA-19G062000 Glycine max Tryptophan cluster factors MYB
Showing 25 profiles of page 178 from 183 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.