JASPAR CORE

  1. Home
  2. Collection core

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2691.1 ZNF841 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2692.1 ZNF43 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2693.1 prz1 Schizosaccharomyces pombe C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2694.1 sak1 Schizosaccharomyces pombe Fork head/winged helix factors RFX-related factors
MA2695.1 ste11 Schizosaccharomyces pombe High-mobility group (HMG) domain factors SOX-related factors
MA2696.1 toe1 Schizosaccharomyces pombe C6 zinc cluster factors
MA2697.1 zas1 Schizosaccharomyces pombe C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2698.1 fep1 Schizosaccharomyces pombe Other C4 zinc finger-type factors C4-GATA-related
MA2699.1 loz1 Schizosaccharomyces pombe C2H2 zinc finger factors
MA2700.1 pcr1 Schizosaccharomyces pombe Basic leucine zipper factors (bZIP) Jun-related
MA2701.1 FZF1 Saccharomyces cerevisiae C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2702.1 PIP2 Saccharomyces cerevisiae C6 zinc cluster factors
MA2703.1 PPR1 Saccharomyces cerevisiae C6 zinc cluster factors
MA2704.1 RTG1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2705.1 SDD4 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA2706.1 SMP1 Saccharomyces cerevisiae MADS box factors Responders to external signals (SRF/RLM1)
MA2707.1 ACA1 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP) Jun-related
MA2708.1 SlDof4 Solanum lycopersicum Other C4 zinc finger-type factors DOF
MA2709.1 SolycHsfA2 Solanum lycopersicum Heat shock factors HSF
MA2710.1 SolycHsfB1 Solanum lycopersicum Heat shock factors HSF
MA2711.1 SolycHsfB2b Solanum lycopersicum Heat shock factors HSF
MA2712.1 eil1 Solanum lycopersicum EIL
MA2713.1 SlDof14 Solanum lycopersicum Other C4 zinc finger-type factors DOF
MA2714.1 APETALA2a Solanum lycopersicum AP2/EREBP AP2
MA2715.1 Solyc03g124110 Solanum lycopersicum AP2/EREBP ERF/DREB
Showing 25 profiles of page 181 from 183 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.