JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0911.1 Hoxa11 Mus musculus Homeo domain factors HOX
MA0911.2 Hoxa11 Mus musculus Homeo domain factors HOX
MA0912.1 Hoxd3 Mus musculus Homeo domain factors HOX
MA0912.2 HOXD3 Homo sapiens Homeo domain factors HOX
MA0913.1 Hoxd9 Mus musculus Homeo domain factors HOX
MA0913.2 HOXD9 Homo sapiens Homeo domain factors HOX
MA0913.3 HOXD9 Homo sapiens Homeo domain factors HOX
MA0914.1 ISL2 Homo sapiens Homeo domain factors HD-LIM
MA0914.2 ISL2 Homo sapiens Homeo domain factors HD-LIM
MA0915.1 dve Drosophila melanogaster Homeo domain factors
Showing 10 profiles of page 182 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.